Preprint

  • Fast and Accurate Clustering of Single Cell Epigenomes Reveals Cis-Regulatory Elements in Rare Cell Types
    Rongxin Fang, Sebastian Preissl, Xiaomeng Hou, Jacinta Lucero, Xinxin Wang, Amir Motamedi, Andrew K. Shiau, Eran A. Mukamel, Yanxiao Zhang, M. Margarita Behrens, Joseph Ecker, Bing Ren
    bioRxiv, 2019 April 22; doi:https://doi.org/10.1101/615179

  • Common DNA sequence variation influences 3-dimensional conformation of the human genome
    David U. Gorkin*, Yunjiang Qiu*, Ming Hu*, Kipper Fletez-Brant, Tristin Liu, Anthony D. Schmitt, Amina Noor, Joshua Chiou, Kyle J Gaulton, Jonathan Sebat, Yun Li, Kasper D. Hansen, Bing Ren
    bioRxiv, 2019 March 30; doi:https://doi.org/10.1101/592741

  • 3D Chromatin Architecture Remodeling during Human Cardiomyocyte Differentiation Reveals A Novel Role of HERV-H In Demarcating Chromatin Domains
    Yanxiao Zhang*, Ting Li*, Sebastian Preissl*, Jonathan Grinstein, Elie Farah, Eugin Destici, Ah Young Lee, Sora Chee, Yunjiang Qiu, Kaiyue Ma, Zhen Ye, Quan Zhu, Hui Huang, Rong Hu, Rongxin Fang, Sylvia Evans, Neil Chi#, Bing Ren#
    bioRxiv, 2018 December 04; doi:https://doi.org/10.1101/485961

  • Simultaneous profiling of DNA methylation and chromatin architecture in mixed populations and in single cells
    Guoqiang Li*, Yaping Liu*, Yanxiao Zhang, Rongxin Fang, Manolis Kellis, Bing Ren
    bioRxiv, 2018 November 14; doi:https://doi.org/10.1101/470963

  • Systematic mapping of chromatin state landscapes during mouse development
    David Gorkin*, Iros Barozzi*, Yanxiao Zhang*, Ah Young Lee, Bin Lee, Yuan Zhao, Andre Wildberg, Bo Ding, Bo Zhang, Mengchi Wang, J Seth Strattan, Jean M Davidson, Yunjiang Qiu, Veena Afzal, Jennifer A Akiyama, Ingrid Plajzer-Frick, Catherine S Pickle, Momoe Kato, Tyler H Garvin, Quan T Pham, Anne N Harrington, Brandon J Mannion, Elizabeth A Lee, Yoko Fukuda-Yuzawa, Yupeng He, Sebastian Preissl, Sora Chee, Brian A Williams, Diane Trout, Henry Amrhein, Hongbo Yang, J Michael Cherry, Yin Shen, Joseph R Ecker, Wei Wang, Diane E Dickel, Axel Visel, Len A Pennacchio, Bing Ren
    bioRxiv, 2017 July 21; doi:https://doi.org/10.1101/166652

  • Preservation of Chromatin Organization after Acute Loss of CTCF in Mouse Embryonic Stem Cells
    Naoki Kubo, Haruhiko Ishii, David Gorkin, Franz Meitinger, Xiong Xiong, Rongxin Fang, Tristin Liu, Zhen Ye, Bin Li, Jesse R. Dixon, Arshad Desai, Huimin Zhao, Bing Ren
    bioRxiv, 2017 March 20; doi:https://doi.org/10.1101/118737