Welcome to the Human Embryonic Stem Cell Multi-lineage Differentiation Epigenome Project!
DNA methylome (mCG/CG, txt files)
The methylome for IMR90 (as well as for H1) can be found here (Lister et al., Nature, 2009).
Transcriptome (BAM files)
Histone modifications and all sequencing reads
All sequencing reads, including those for mapping 13-24 types of histone modifications, have been deposited to the Sequence Read Archive (SRA) under accession number SRP000941
Supplementary Tables for Xie et al., Cell, 2003 (Microsoft Excel files)
Table S1: Lists of lineage-restricted coding genes and lncRNA identified in this study.
Table S2: Lists of all enhancers and lineage-restricted enhancers in each of the 6 cell types.
Table S3: Lists of motifs identified in lineage-restricted enhancers.
Table S4: Lists of predicted enhancer-promoter pairs for all lineage-restricted enhancers.
Table S5: Lists of LMRs and UMRs identified in each of the 6 cell types.
Table S6: Lists of all DMVs identified in each of the 6 cell types.
Table S7: Lists of all genes with promoters in DMVs, including those that are classified as oncogenes and tumor suppressor genes.